WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C40C9.5e.1 Sequence Name  C40C9.5e.1
Length (nt)  2544   Chromosome Location  X: 13625690-13631095
Chromosome . Primary Identifier  X Chromosome Location . Start  13625690
Chromosome Location . End  13631095 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C40C9.5e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006412 nlg-1 C40C9.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C40C9.5e C40C9.5e 2544   X: 13625690-13625744

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C40C9.5e.1 13625690 13631095 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon257961   55   X: 13625690-13625744 Caenorhabditis elegans
Exon257967   110   X: 13625788-13625897 Caenorhabditis elegans
Exon257973   138   X: 13626624-13626761 Caenorhabditis elegans
Exon257977   105   X: 13626916-13627020 Caenorhabditis elegans
Exon257986   143   X: 13627183-13627325 Caenorhabditis elegans
Exon257995   261   X: 13627816-13628076 Caenorhabditis elegans
Exon258004   326   X: 13628141-13628466 Caenorhabditis elegans
Exon258013   128   X: 13628518-13628645 Caenorhabditis elegans
Exon258024   252   X: 13628809-13629060 Caenorhabditis elegans
Exon258031   156   X: 13629342-13629497 Caenorhabditis elegans
Exon258038   170   X: 13629607-13629776 Caenorhabditis elegans
Exon258045   132   X: 13630061-13630192 Caenorhabditis elegans
Exon258052   275   X: 13630241-13630515 Caenorhabditis elegans
Exon258059   113   X: 13630560-13630672 Caenorhabditis elegans
Exon258066   133   X: 13630820-13630952 Caenorhabditis elegans
Exon258070   47   X: 13631049-13631095 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C40C9.5e.1 13625690 13631095 -1

1 Sequence

Length
2544

1 Sequence Ontology Term

Identifier Name Description
transcript