WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C40C9.5f.1 Sequence Name  C40C9.5f.1
Length (nt)  2397   Chromosome Location  X: 13625690-13631095
Chromosome . Primary Identifier  X Chromosome Location . Start  13625690
Chromosome Location . End  13631095 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C40C9.5f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006412 nlg-1 C40C9.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C40C9.5f C40C9.5f 2397   X: 13625690-13625735

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C40C9.5f.1 13625690 13631095 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon257962   46   X: 13625690-13625735 Caenorhabditis elegans
Exon257968   110   X: 13625788-13625897 Caenorhabditis elegans
Exon257978   105   X: 13626916-13627020 Caenorhabditis elegans
Exon257987   143   X: 13627183-13627325 Caenorhabditis elegans
Exon257996   261   X: 13627816-13628076 Caenorhabditis elegans
Exon258005   326   X: 13628141-13628466 Caenorhabditis elegans
Exon258014   128   X: 13628518-13628645 Caenorhabditis elegans
Exon258025   252   X: 13628809-13629060 Caenorhabditis elegans
Exon258032   156   X: 13629342-13629497 Caenorhabditis elegans
Exon258039   170   X: 13629607-13629776 Caenorhabditis elegans
Exon258046   132   X: 13630061-13630192 Caenorhabditis elegans
Exon258053   275   X: 13630241-13630515 Caenorhabditis elegans
Exon258060   113   X: 13630560-13630672 Caenorhabditis elegans
Exon258067   133   X: 13630820-13630952 Caenorhabditis elegans
Exon258071   47   X: 13631049-13631095 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C40C9.5f.1 13625690 13631095 -1

1 Sequence

Length
2397

1 Sequence Ontology Term

Identifier Name Description
transcript