WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C40C9.5b.1 Sequence Name  C40C9.5b.1
Length (nt)  2776   Chromosome Location  X: 13625373-13631166
Chromosome . Primary Identifier  X Chromosome Location . Start  13625373
Chromosome Location . End  13631166 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C40C9.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006412 nlg-1 C40C9.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C40C9.5b C40C9.5b 2388   X: 13625690-13625735

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C40C9.5b.1 13625373 13631166 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon258017   363   X: 13625373-13625735 Caenorhabditis elegans
Exon258026   110   X: 13625788-13625897 Caenorhabditis elegans
Exon258036   105   X: 13626916-13627020 Caenorhabditis elegans
Exon258044   143   X: 13627183-13627325 Caenorhabditis elegans
Exon258053   261   X: 13627816-13628076 Caenorhabditis elegans
Exon258062   326   X: 13628141-13628466 Caenorhabditis elegans
Exon258071   128   X: 13628518-13628645 Caenorhabditis elegans
Exon258082   252   X: 13628809-13629060 Caenorhabditis elegans
Exon258089   156   X: 13629342-13629497 Caenorhabditis elegans
Exon258096   170   X: 13629607-13629776 Caenorhabditis elegans
Exon258103   132   X: 13630061-13630192 Caenorhabditis elegans
Exon258110   266   X: 13630241-13630506 Caenorhabditis elegans
Exon258117   113   X: 13630560-13630672 Caenorhabditis elegans
Exon258124   133   X: 13630820-13630952 Caenorhabditis elegans
Exon258135   118   X: 13631049-13631166 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C40C9.5b.1 13625373 13631166 -1

1 Sequence

Length
2776

1 Sequence Ontology Term

Identifier Name Description
transcript