WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C40C9.5d.1 Sequence Name  C40C9.5d.1
Length (nt)  2626   Chromosome Location  X: 13625433-13631172
Chromosome . Primary Identifier  X Chromosome Location . Start  13625433
Chromosome Location . End  13631172 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C40C9.5d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006412 nlg-1 C40C9.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C40C9.5d C40C9.5d 2292   X: 13625690-13625744

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C40C9.5d.1 13625433 13631172 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon258019   312   X: 13625433-13625744 Caenorhabditis elegans
Exon258027   110   X: 13625788-13625897 Caenorhabditis elegans
Exon258046   143   X: 13627183-13627325 Caenorhabditis elegans
Exon258055   261   X: 13627816-13628076 Caenorhabditis elegans
Exon258064   326   X: 13628141-13628466 Caenorhabditis elegans
Exon258073   128   X: 13628518-13628645 Caenorhabditis elegans
Exon258084   252   X: 13628809-13629060 Caenorhabditis elegans
Exon258091   156   X: 13629342-13629497 Caenorhabditis elegans
Exon258098   170   X: 13629607-13629776 Caenorhabditis elegans
Exon258105   132   X: 13630061-13630192 Caenorhabditis elegans
Exon258111   266   X: 13630241-13630506 Caenorhabditis elegans
Exon258119   113   X: 13630560-13630672 Caenorhabditis elegans
Exon258126   133   X: 13630820-13630952 Caenorhabditis elegans
Exon258136   124   X: 13631049-13631172 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C40C9.5d.1 13625433 13631172 -1

1 Sequence

Length
2626

1 Sequence Ontology Term

Identifier Name Description
transcript