WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C40C9.2.1 Sequence Name  C40C9.2.1
Length (nt)  1944   Chromosome Location  X: 13642313-13646898
Chromosome . Primary Identifier  X Chromosome Location . Start  13642313
Chromosome Location . End  13646898 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C40C9.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000048 acr-9 C40C9.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C40C9.2 C40C9.2 1605   X: 13642522-13642653

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C40C9.2.1 13642313 13646898 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon258154   341   X: 13642313-13642653 Caenorhabditis elegans
Exon258155   107   X: 13642702-13642808 Caenorhabditis elegans
Exon258156   102   X: 13642857-13642958 Caenorhabditis elegans
Exon258157   238   X: 13643416-13643653 Caenorhabditis elegans
Exon258158   110   X: 13643700-13643809 Caenorhabditis elegans
Exon258159   87   X: 13643857-13643943 Caenorhabditis elegans
Exon258160   93   X: 13643994-13644086 Caenorhabditis elegans
Exon258161   96   X: 13644131-13644226 Caenorhabditis elegans
Exon258163   127   X: 13644843-13644969 Caenorhabditis elegans
Exon258165   151   X: 13645296-13645446 Caenorhabditis elegans
Exon258166   161   X: 13645927-13646087 Caenorhabditis elegans
Exon258167   174   X: 13646137-13646310 Caenorhabditis elegans
Exon258168   157   X: 13646742-13646898 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C40C9.2.1 13642313 13646898 -1

1 Sequence

Length
1944

1 Sequence Ontology Term

Identifier Name Description
transcript