WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K11E4.4a.1 Sequence Name  K11E4.4a.1
Length (nt)  2936   Chromosome Location  X: 13727293-13734407
Chromosome . Primary Identifier  X Chromosome Location . Start  13727293
Chromosome Location . End  13734407 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K11E4.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010776 pix-1 K11E4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K11E4.4a K11E4.4a 1941   X: 13727302-13727373

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K11E4.4a.1 13727293 13734407 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon258276   81   X: 13727293-13727373 Caenorhabditis elegans
Exon258278   127   X: 13727484-13727610 Caenorhabditis elegans
Exon258280   45   X: 13727655-13727699 Caenorhabditis elegans
Exon258282   136   X: 13727752-13727887 Caenorhabditis elegans
Exon258284   96   X: 13728281-13728376 Caenorhabditis elegans
Exon258286   123   X: 13728421-13728543 Caenorhabditis elegans
Exon258288   130   X: 13728598-13728727 Caenorhabditis elegans
Exon258290   60   X: 13728971-13729030 Caenorhabditis elegans
Exon258292   155   X: 13729119-13729273 Caenorhabditis elegans
Exon258294   131   X: 13729321-13729451 Caenorhabditis elegans
Exon258296   274   X: 13729518-13729791 Caenorhabditis elegans
Exon258304   113   X: 13731311-13731423 Caenorhabditis elegans
Exon258305   277   X: 13731497-13731773 Caenorhabditis elegans
Exon258306   76   X: 13733157-13733232 Caenorhabditis elegans
Exon258307   1112   X: 13733296-13734407 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K11E4.4a.1 13727293 13734407 1

1 Sequence

Length
2936

1 Sequence Ontology Term

Identifier Name Description
transcript