WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK1086.1a.1 Sequence Name  ZK1086.1a.1
Length (nt)  2742   Chromosome Location  X: 13798210-13809873
Chromosome . Primary Identifier  X Chromosome Location . Start  13798210
Chromosome Location . End  13809873 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK1086.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00014215 obr-3 ZK1086.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK1086.1a ZK1086.1a 2202   X: 13798639-13798800

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZK1086.1a.1 13798210 13809873 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon258406   591   X: 13798210-13798800 Caenorhabditis elegans
Exon258409   238   X: 13799160-13799397 Caenorhabditis elegans
Exon258411   272   X: 13799451-13799722 Caenorhabditis elegans
Exon258414   586   X: 13800263-13800848 Caenorhabditis elegans
Exon258416   188   X: 13800893-13801080 Caenorhabditis elegans
Exon258418   246   X: 13801648-13801893 Caenorhabditis elegans
Exon258420   75   X: 13801965-13802039 Caenorhabditis elegans
Exon258422   114   X: 13802176-13802289 Caenorhabditis elegans
Exon258424   90   X: 13802350-13802439 Caenorhabditis elegans
Exon258426   192   X: 13802906-13803097 Caenorhabditis elegans
Exon258429   150   X: 13809724-13809873 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZK1086.1a.1 13798210 13809873 -1

1 Sequence

Length
2742

1 Sequence Ontology Term

Identifier Name Description
transcript