WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C05G5.1.1 Sequence Name  C05G5.1.1
Length (nt)  1737   Chromosome Location  X: 14734442-14740119
Chromosome . Primary Identifier  X Chromosome Location . Start  14734442
Chromosome Location . End  14740119 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C05G5.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007347 C05G5.1 C05G5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05G5.1 C05G5.1 1371   X: 14734511-14734635

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C05G5.1.1 14734442 14740119 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon260929   194   X: 14734442-14734635 Caenorhabditis elegans
Exon260931   340   X: 14734698-14735037 Caenorhabditis elegans
Exon260935   173   X: 14735239-14735411 Caenorhabditis elegans
Exon260939   181   X: 14735802-14735982 Caenorhabditis elegans
Exon260943   217   X: 14736033-14736249 Caenorhabditis elegans
Exon260947   83   X: 14736736-14736818 Caenorhabditis elegans
Exon260951   156   X: 14736867-14737022 Caenorhabditis elegans
Exon260955   199   X: 14737280-14737478 Caenorhabditis elegans
Exon260960   81   X: 14739856-14739936 Caenorhabditis elegans
Exon260963   113   X: 14740007-14740119 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C05G5.1.1 14734442 14740119 -1

1 Sequence

Length
1737

1 Sequence Ontology Term

Identifier Name Description
transcript