WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C05G5.2a.1 Sequence Name  C05G5.2a.1
Length (nt)  2189   Chromosome Location  X: 14747303-14750442
Chromosome . Primary Identifier  X Chromosome Location . Start  14747303
Chromosome Location . End  14750442 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C05G5.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007348 wshc-2 C05G5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05G5.2a C05G5.2a 2058   X: 14747340-14747402

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C05G5.2a.1 14747303 14750442 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon260972   100   X: 14747303-14747402 Caenorhabditis elegans
Exon260974   165   X: 14747456-14747620 Caenorhabditis elegans
Exon260976   135   X: 14747717-14747851 Caenorhabditis elegans
Exon260978   247   X: 14747901-14748147 Caenorhabditis elegans
Exon260980   482   X: 14748597-14749078 Caenorhabditis elegans
Exon260982   252   X: 14749128-14749379 Caenorhabditis elegans
Exon260984   237   X: 14749494-14749730 Caenorhabditis elegans
Exon260986   186   X: 14749776-14749961 Caenorhabditis elegans
Exon260989   225   X: 14750014-14750238 Caenorhabditis elegans
Exon260991   160   X: 14750283-14750442 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C05G5.2a.1 14747303 14750442 1

1 Sequence

Length
2189

1 Sequence Ontology Term

Identifier Name Description
transcript