WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F42D1.3.2 Sequence Name  F42D1.3.2
Length (nt)  1674   Chromosome Location  X: 14793445-14804359
Chromosome . Primary Identifier  X Chromosome Location . Start  14793445
Chromosome Location . End  14804359 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F42D1.3.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009629 sprr-2 F42D1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F42D1.3 F42D1.3 1356   X: 14800168-14800255

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F42D1.3.2 14793445 14804359 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon261021   49   X: 14793445-14793493 Caenorhabditis elegans
Exon261023   97   X: 14794210-14794306 Caenorhabditis elegans
Exon261027   136   X: 14800120-14800255 Caenorhabditis elegans
Exon261031   101   X: 14801159-14801259 Caenorhabditis elegans
Exon261034   173   X: 14801304-14801476 Caenorhabditis elegans
Exon261037   126   X: 14801522-14801647 Caenorhabditis elegans
Exon261040   82   X: 14802083-14802164 Caenorhabditis elegans
Exon261043   98   X: 14802214-14802311 Caenorhabditis elegans
Exon261046   183   X: 14802889-14803071 Caenorhabditis elegans
Exon261049   85   X: 14803190-14803274 Caenorhabditis elegans
Exon261052   129   X: 14803321-14803449 Caenorhabditis elegans
Exon261055   80   X: 14803495-14803574 Caenorhabditis elegans
Exon261058   335   X: 14804025-14804359 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F42D1.3.2 14793445 14804359 1

1 Sequence

Length
1674

1 Sequence Ontology Term

Identifier Name Description
transcript