WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F42D1.3.1 Sequence Name  F42D1.3.1
Length (nt)  1526   Chromosome Location  X: 14800120-14804357
Chromosome . Primary Identifier  X Chromosome Location . Start  14800120
Chromosome Location . End  14804357 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F42D1.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009629 sprr-2 F42D1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F42D1.3 F42D1.3 1356   X: 14800168-14800255

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F42D1.3.1 14800120 14804357 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon261029   136   X: 14800120-14800255 Caenorhabditis elegans
Exon261030   101   X: 14801159-14801259 Caenorhabditis elegans
Exon261033   173   X: 14801304-14801476 Caenorhabditis elegans
Exon261036   126   X: 14801522-14801647 Caenorhabditis elegans
Exon261039   82   X: 14802083-14802164 Caenorhabditis elegans
Exon261042   98   X: 14802214-14802311 Caenorhabditis elegans
Exon261045   183   X: 14802889-14803071 Caenorhabditis elegans
Exon261048   85   X: 14803190-14803274 Caenorhabditis elegans
Exon261051   129   X: 14803321-14803449 Caenorhabditis elegans
Exon261054   80   X: 14803495-14803574 Caenorhabditis elegans
Exon261057   333   X: 14804025-14804357 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F42D1.3.1 14800120 14804357 1

1 Sequence

Length
1526

1 Sequence Ontology Term

Identifier Name Description
transcript