WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F42D1.3.3 Sequence Name  F42D1.3.3
Length (nt)  1627   Chromosome Location  X: 14794208-14804359
Chromosome . Primary Identifier  X Chromosome Location . Start  14794208
Chromosome Location . End  14804359 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F42D1.3.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009629 sprr-2 F42D1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F42D1.3 F42D1.3 1356   X: 14800168-14800255

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F42D1.3.3 14794208 14804359 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon261083   99   X: 14794208-14794306 Caenorhabditis elegans
Exon261089   136   X: 14800120-14800255 Caenorhabditis elegans
Exon261093   101   X: 14801159-14801259 Caenorhabditis elegans
Exon261096   173   X: 14801304-14801476 Caenorhabditis elegans
Exon261099   126   X: 14801522-14801647 Caenorhabditis elegans
Exon261102   82   X: 14802083-14802164 Caenorhabditis elegans
Exon261105   98   X: 14802214-14802311 Caenorhabditis elegans
Exon261108   183   X: 14802889-14803071 Caenorhabditis elegans
Exon261111   85   X: 14803190-14803274 Caenorhabditis elegans
Exon261114   129   X: 14803321-14803449 Caenorhabditis elegans
Exon261117   80   X: 14803495-14803574 Caenorhabditis elegans
Exon261120   335   X: 14804025-14804359 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F42D1.3.3 14794208 14804359 1

1 Sequence

Length
1627

1 Sequence Ontology Term

Identifier Name Description
transcript