WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F39B1.1.1 Sequence Name  F39B1.1.1
Length (nt)  5290   Chromosome Location  X: 15234690-15246399
Chromosome . Primary Identifier  X Chromosome Location . Start  15234690
Chromosome Location . End  15246399 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F39B1.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009552 piki-1 F39B1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F39B1.1 F39B1.1 4824   X: 15235122-15235319

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F39B1.1.1 15234690 15246399 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

23 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon261925   630   X: 15234690-15235319 Caenorhabditis elegans
Exon261926   146   X: 15235396-15235541 Caenorhabditis elegans
Exon261927   151   X: 15235596-15235746 Caenorhabditis elegans
Exon261935   136   X: 15237608-15237743 Caenorhabditis elegans
Exon261936   101   X: 15237794-15237894 Caenorhabditis elegans
Exon261937   76   X: 15237945-15238020 Caenorhabditis elegans
Exon261938   245   X: 15238228-15238472 Caenorhabditis elegans
Exon261939   157   X: 15238524-15238680 Caenorhabditis elegans
Exon261940   437   X: 15238731-15239167 Caenorhabditis elegans
Exon261941   586   X: 15239413-15239998 Caenorhabditis elegans
Exon261942   447   X: 15240084-15240530 Caenorhabditis elegans
Exon261943   161   X: 15240577-15240737 Caenorhabditis elegans
Exon261944   449   X: 15240788-15241236 Caenorhabditis elegans
Exon261947   119   X: 15241662-15241780 Caenorhabditis elegans
Exon261948   164   X: 15241833-15241996 Caenorhabditis elegans
Exon261949   130   X: 15242262-15242391 Caenorhabditis elegans
Exon261953   229   X: 15243611-15243839 Caenorhabditis elegans
Exon261954   109   X: 15243884-15243992 Caenorhabditis elegans
Exon261955   215   X: 15244873-15245087 Caenorhabditis elegans
Exon261956   168   X: 15245294-15245461 Caenorhabditis elegans
Exon261957   206   X: 15245592-15245797 Caenorhabditis elegans
Exon261958   150   X: 15246072-15246221 Caenorhabditis elegans
Exon261959   78   X: 15246322-15246399 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F39B1.1.1 15234690 15246399 -1

1 Sequence

Length
5290

1 Sequence Ontology Term

Identifier Name Description
transcript