WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y15E3A.1a Sequence Name  Y15E3A.1a
Length (nt)  1425   Chromosome Location  X: 15309379-15309539
Chromosome . Primary Identifier  X Chromosome Location . Start  15309379
Chromosome Location . End  15309539
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y15E3A.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE27779 NHR-91, isoform a 53.2 474 Caenorhabditis elegans
 

Other

11 RNAi

WormBase ID
WBRNAi00055550
WBRNAi00061357
WBRNAi00020061
WBRNAi00020062
WBRNAi00036652
WBRNAi00063674
WBRNAi00063675
WBRNAi00063686
WBRNAi00084686
WBRNAi00070205
WBRNAi00084695

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y15E3A.1a 15309379 15309539 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003681 nhr-91 Y15E3A.1 Caenorhabditis elegans

9 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y15E3A.1a 15309379 15309539 1
CDS:Y15E3A.1a 15309597 15309702 1
CDS:Y15E3A.1a 15309754 15309842 1
CDS:Y15E3A.1a 15312663 15312758 1
CDS:Y15E3A.1a 15312827 15312879 1
CDS:Y15E3A.1a 15312931 15313088 1
CDS:Y15E3A.1a 15313365 15313768 1
CDS:Y15E3A.1a 15313817 15314068 1
CDS:Y15E3A.1a 15314360 15314465 1

1 Sequence

Length
1425

1 Sequence Ontology Term

Identifier Name Description
CDS  

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y15E3A.1a.4 Y15E3A.1a.4 1865   X: 15309369-15314895
Transcript:Y15E3A.1a.3 Y15E3A.1a.3 1869   X: 15309369-15314899
Transcript:Y15E3A.1a.2 Y15E3A.1a.2 1858   X: 15309375-15314894
Transcript:Y15E3A.1a.1 Y15E3A.1a.1 1860   X: 15309375-15314896