WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F39D8.1c.1 Sequence Name  F39D8.1c.1
Length (nt)  2775   Chromosome Location  X: 15409342-15413385
Chromosome . Primary Identifier  X Chromosome Location . Start  15409342
Chromosome Location . End  15413385 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F39D8.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004123 pqn-36 F39D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F39D8.1c F39D8.1c 2775   X: 15409342-15409397

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F39D8.1c.1 15409342 15413385 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon262270   56   X: 15409342-15409397 Caenorhabditis elegans
Exon262274   63   X: 15409454-15409516 Caenorhabditis elegans
Exon262283   67   X: 15409568-15409634 Caenorhabditis elegans
Exon262292   420   X: 15410059-15410478 Caenorhabditis elegans
Exon262305   1136   X: 15410565-15411700 Caenorhabditis elegans
Exon262318   760   X: 15411751-15412510 Caenorhabditis elegans
Exon262326   62   X: 15412565-15412626 Caenorhabditis elegans
Exon262334   107   X: 15412848-15412954 Caenorhabditis elegans
Exon262342   59   X: 15413194-15413252 Caenorhabditis elegans
Exon262348   45   X: 15413341-15413385 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F39D8.1c.1 15409342 15413385 -1

1 Sequence

Length
2775

1 Sequence Ontology Term

Identifier Name Description
transcript