WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H13N06.6c.1 Sequence Name  H13N06.6c.1
Length (nt)  2012   Chromosome Location  X: 15500263-15504895
Chromosome . Primary Identifier  X Chromosome Location . Start  15500263
Chromosome Location . End  15504895 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H13N06.6c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006541 tbh-1 H13N06.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H13N06.6c H13N06.6c 1821   X: 15500354-15500633

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H13N06.6c.1 15500263 15504895 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon262601   371   X: 15500263-15500633 Caenorhabditis elegans
Exon262604   362   X: 15500682-15501043 Caenorhabditis elegans
Exon262607   118   X: 15501491-15501608 Caenorhabditis elegans
Exon262610   524   X: 15501665-15502188 Caenorhabditis elegans
Exon262613   81   X: 15502237-15502317 Caenorhabditis elegans
Exon262616   135   X: 15502905-15503039 Caenorhabditis elegans
Exon262619   189   X: 15503085-15503273 Caenorhabditis elegans
Exon262622   73   X: 15503315-15503387 Caenorhabditis elegans
Exon262625   58   X: 15504311-15504368 Caenorhabditis elegans
Exon262628   101   X: 15504795-15504895 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H13N06.6c.1 15500263 15504895 -1

1 Sequence

Length
2012

1 Sequence Ontology Term

Identifier Name Description
transcript