WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0395.1.2 Sequence Name  B0395.1.2
Length (nt)  1633   Chromosome Location  X: 16017505-16021755
Chromosome . Primary Identifier  X Chromosome Location . Start  16017505
Chromosome Location . End  16021755 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0395.1.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003729 nhx-1 B0395.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0395.1 B0395.1 1545   X: 16017518-16017608

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0395.1.2 16017505 16021755 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon263580   104   X: 16017505-16017608 Caenorhabditis elegans
Exon263583   123   X: 16018675-16018797 Caenorhabditis elegans
Exon263585   138   X: 16018844-16018981 Caenorhabditis elegans
Exon263587   111   X: 16019031-16019141 Caenorhabditis elegans
Exon263589   80   X: 16019185-16019264 Caenorhabditis elegans
Exon263592   155   X: 16019675-16019829 Caenorhabditis elegans
Exon263594   102   X: 16019879-16019980 Caenorhabditis elegans
Exon263596   102   X: 16020037-16020138 Caenorhabditis elegans
Exon263598   116   X: 16020487-16020602 Caenorhabditis elegans
Exon263600   126   X: 16020652-16020777 Caenorhabditis elegans
Exon263602   167   X: 16020824-16020990 Caenorhabditis elegans
Exon263604   60   X: 16021038-16021097 Caenorhabditis elegans
Exon263606   249   X: 16021507-16021755 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0395.1.2 16017505 16021755 1

1 Sequence

Length
1633

1 Sequence Ontology Term

Identifier Name Description
transcript