WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52E10.1a.1 Sequence Name  F52E10.1a.1
Length (nt)  3702   Chromosome Location  X: 16275769-16282392
Chromosome . Primary Identifier  X Chromosome Location . Start  16275769
Chromosome Location . End  16282392 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52E10.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004745 sdc-1 F52E10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52E10.1a F52E10.1a 3606   X: 16275773-16275846

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52E10.1a.1 16275769 16282392 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon263851   78   X: 16275769-16275846 Caenorhabditis elegans
Exon263852   233   X: 16276008-16276240 Caenorhabditis elegans
Exon263854   236   X: 16276684-16276919 Caenorhabditis elegans
Exon263857   290   X: 16276967-16277256 Caenorhabditis elegans
Exon263858   331   X: 16277310-16277640 Caenorhabditis elegans
Exon263860   183   X: 16277867-16278049 Caenorhabditis elegans
Exon263862   239   X: 16278238-16278476 Caenorhabditis elegans
Exon263864   386   X: 16278634-16279019 Caenorhabditis elegans
Exon263866   134   X: 16279152-16279285 Caenorhabditis elegans
Exon263868   63   X: 16280028-16280090 Caenorhabditis elegans
Exon263870   240   X: 16280189-16280428 Caenorhabditis elegans
Exon263872   876   X: 16280657-16281532 Caenorhabditis elegans
Exon263874   133   X: 16281931-16282063 Caenorhabditis elegans
Exon263876   280   X: 16282113-16282392 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52E10.1a.1 16275769 16282392 1

1 Sequence

Length
3702

1 Sequence Ontology Term

Identifier Name Description
transcript