WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F52E10.1a Sequence Name  F52E10.1a
Length (nt)  3606   Chromosome Location  X: 16275773-16275846
Chromosome . Primary Identifier  X Chromosome Location . Start  16275773
Chromosome Location . End  16275846
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52E10.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE41321 SDC-1, isoform a 139.0 1201 Caenorhabditis elegans
 

Other

10 RNAi

WormBase ID
WBRNAi00089814
WBRNAi00047991
WBRNAi00015416
WBRNAi00089914
WBRNAi00090074
WBRNAi00090232
WBRNAi00090364
WBRNAi00090411
WBRNAi00090458
WBRNAi00090505

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F52E10.1a 16275773 16275846 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004745 sdc-1 F52E10.1 Caenorhabditis elegans

14 Locations


Feature . Primary Identifier
Start End Strand
CDS:F52E10.1a 16275773 16275846 1
CDS:F52E10.1a 16276008 16276240 1
CDS:F52E10.1a 16276684 16276919 1
CDS:F52E10.1a 16276967 16277256 1
CDS:F52E10.1a 16277310 16277640 1
CDS:F52E10.1a 16277867 16278049 1
CDS:F52E10.1a 16278238 16278476 1
CDS:F52E10.1a 16278634 16279019 1
CDS:F52E10.1a 16279152 16279285 1
CDS:F52E10.1a 16280028 16280090 1
CDS:F52E10.1a 16280189 16280428 1
CDS:F52E10.1a 16280657 16281532 1
CDS:F52E10.1a 16281931 16282063 1
CDS:F52E10.1a 16282113 16282300 1

1 Sequence

Length
3606

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F52E10.1a.1 F52E10.1a.1 3702   X: 16275769-16282392