WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52E10.1b.1 Sequence Name  F52E10.1b.1
Length (nt)  3856   Chromosome Location  X: 16275763-16282534
Chromosome . Primary Identifier  X Chromosome Location . Start  16275763
Chromosome Location . End  16282534 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52E10.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004745 sdc-1 F52E10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52E10.1b F52E10.1b 3612   X: 16275773-16275846

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52E10.1b.1 16275763 16282534 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon263911   84   X: 16275763-16275846 Caenorhabditis elegans
Exon263914   233   X: 16276008-16276240 Caenorhabditis elegans
Exon263916   236   X: 16276684-16276919 Caenorhabditis elegans
Exon263917   296   X: 16276961-16277256 Caenorhabditis elegans
Exon263920   331   X: 16277310-16277640 Caenorhabditis elegans
Exon263922   183   X: 16277867-16278049 Caenorhabditis elegans
Exon263924   239   X: 16278238-16278476 Caenorhabditis elegans
Exon263926   386   X: 16278634-16279019 Caenorhabditis elegans
Exon263928   134   X: 16279152-16279285 Caenorhabditis elegans
Exon263930   63   X: 16280028-16280090 Caenorhabditis elegans
Exon263932   240   X: 16280189-16280428 Caenorhabditis elegans
Exon263934   876   X: 16280657-16281532 Caenorhabditis elegans
Exon263936   133   X: 16281931-16282063 Caenorhabditis elegans
Exon263938   422   X: 16282113-16282534 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52E10.1b.1 16275763 16282534 1

1 Sequence

Length
3856

1 Sequence Ontology Term

Identifier Name Description
transcript