WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F01G12.5a.1 Sequence Name  F01G12.5a.1
Length (nt)  5715   Chromosome Location  X: 16380597-16389340
Chromosome . Primary Identifier  X Chromosome Location . Start  16380597
Chromosome Location . End  16389340 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F01G12.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002280 let-2 F01G12.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F01G12.5a F01G12.5a 5277   X: 16381022-16381114

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F01G12.5a.1 16380597 16389340 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon264120   518   X: 16380597-16381114 Caenorhabditis elegans
Exon264122   464   X: 16381173-16381636 Caenorhabditis elegans
Exon264124   792   X: 16381719-16382510 Caenorhabditis elegans
Exon264126   232   X: 16382564-16382795 Caenorhabditis elegans
Exon264128   815   X: 16382841-16383655 Caenorhabditis elegans
Exon264130   673   X: 16383933-16384605 Caenorhabditis elegans
Exon264132   862   X: 16384658-16385519 Caenorhabditis elegans
Exon264134   272   X: 16385567-16385838 Caenorhabditis elegans
Exon264136   165   X: 16385888-16386052 Caenorhabditis elegans
Exon264138   117   X: 16386099-16386215 Caenorhabditis elegans
Exon264141   108   X: 16386754-16386861 Caenorhabditis elegans
Exon264142   78   X: 16386982-16387059 Caenorhabditis elegans
Exon264144   176   X: 16387111-16387286 Caenorhabditis elegans
Exon264146   189   X: 16387788-16387976 Caenorhabditis elegans
Exon264150   100   X: 16388299-16388398 Caenorhabditis elegans
Exon264153   63   X: 16388773-16388835 Caenorhabditis elegans
Exon264156   55   X: 16389033-16389087 Caenorhabditis elegans
Exon264159   36   X: 16389305-16389340 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F01G12.5a.1 16380597 16389340 -1

1 Sequence

Length
5715

1 Sequence Ontology Term

Identifier Name Description
transcript