WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F38E9.2.1 Sequence Name  F38E9.2.1
Length (nt)  3102   Chromosome Location  X: 16456927-16471333
Chromosome . Primary Identifier  X Chromosome Location . Start  16456927
Chromosome Location . End  16471333 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F38E9.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003555 nas-39 F38E9.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F38E9.2 F38E9.2 2787   X: 16457459-16457672

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F38E9.2.1 16456927 16471333 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

25 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon264206   42   X: 16456927-16456968 Caenorhabditis elegans
Exon264208   10   X: 16457104-16457113 Caenorhabditis elegans
Exon264209   12   X: 16457204-16457215 Caenorhabditis elegans
Exon264210   282   X: 16457391-16457672 Caenorhabditis elegans
Exon264211   121   X: 16458566-16458686 Caenorhabditis elegans
Exon264213   179   X: 16461174-16461352 Caenorhabditis elegans
Exon264217   74   X: 16461664-16461737 Caenorhabditis elegans
Exon264219   73   X: 16461783-16461855 Caenorhabditis elegans
Exon264221   81   X: 16461960-16462040 Caenorhabditis elegans
Exon264223   114   X: 16462088-16462201 Caenorhabditis elegans
Exon264225   96   X: 16463355-16463450 Caenorhabditis elegans
Exon264227   161   X: 16464323-16464483 Caenorhabditis elegans
Exon264229   102   X: 16464538-16464639 Caenorhabditis elegans
Exon264231   155   X: 16464708-16464862 Caenorhabditis elegans
Exon264233   116   X: 16465559-16465674 Caenorhabditis elegans
Exon264235   285   X: 16466332-16466616 Caenorhabditis elegans
Exon264237   162   X: 16466666-16466827 Caenorhabditis elegans
Exon264239   99   X: 16466880-16466978 Caenorhabditis elegans
Exon264241   95   X: 16467975-16468069 Caenorhabditis elegans
Exon264243   94   X: 16468117-16468210 Caenorhabditis elegans
Exon264245   120   X: 16468315-16468434 Caenorhabditis elegans
Exon264247   89   X: 16468516-16468604 Caenorhabditis elegans
Exon264249   108   X: 16470257-16470364 Caenorhabditis elegans
Exon264251   85   X: 16470853-16470937 Caenorhabditis elegans
Exon264253   347   X: 16470987-16471333 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F38E9.2.1 16456927 16471333 1

1 Sequence

Length
3102

1 Sequence Ontology Term

Identifier Name Description
transcript