WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F59C12.1b.1 Sequence Name  F59C12.1b.1
Length (nt)  2219   Chromosome Location  X: 16595231-16602245
Chromosome . Primary Identifier  X Chromosome Location . Start  16595231
Chromosome Location . End  16602245 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F59C12.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000401 cdh-9 F59C12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F59C12.1b F59C12.1b 1758   X: 16595240-16595363

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F59C12.1b.1 16595231 16602245 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon264475   133   X: 16595231-16595363 Caenorhabditis elegans
Exon264479   146   X: 16596126-16596271 Caenorhabditis elegans
Exon264481   66   X: 16597497-16597562 Caenorhabditis elegans
Exon264483   103   X: 16597633-16597735 Caenorhabditis elegans
Exon264485   311   X: 16597785-16598095 Caenorhabditis elegans
Exon264487   88   X: 16598407-16598494 Caenorhabditis elegans
Exon264489   89   X: 16599228-16599316 Caenorhabditis elegans
Exon264491   99   X: 16599680-16599778 Caenorhabditis elegans
Exon264493   60   X: 16599829-16599888 Caenorhabditis elegans
Exon264495   135   X: 16600328-16600462 Caenorhabditis elegans
Exon264497   179   X: 16600509-16600687 Caenorhabditis elegans
Exon264499   118   X: 16600740-16600857 Caenorhabditis elegans
Exon264501   224   X: 16600910-16601133 Caenorhabditis elegans
Exon264502   468   X: 16601778-16602245 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F59C12.1b.1 16595231 16602245 1

1 Sequence

Length
2219

1 Sequence Ontology Term

Identifier Name Description
transcript