WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F59C12.1a.1 Sequence Name  F59C12.1a.1
Length (nt)  2194   Chromosome Location  X: 16595238-16602232
Chromosome . Primary Identifier  X Chromosome Location . Start  16595238
Chromosome Location . End  16602232 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F59C12.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000401 cdh-9 F59C12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F59C12.1a F59C12.1a 1872   X: 16595240-16595363

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F59C12.1a.1 16595238 16602232 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon264476   126   X: 16595238-16595363 Caenorhabditis elegans
Exon264478   146   X: 16596126-16596271 Caenorhabditis elegans
Exon264480   66   X: 16597497-16597562 Caenorhabditis elegans
Exon264482   103   X: 16597633-16597735 Caenorhabditis elegans
Exon264484   311   X: 16597785-16598095 Caenorhabditis elegans
Exon264486   88   X: 16598407-16598494 Caenorhabditis elegans
Exon264488   89   X: 16599228-16599316 Caenorhabditis elegans
Exon264490   99   X: 16599680-16599778 Caenorhabditis elegans
Exon264492   60   X: 16599829-16599888 Caenorhabditis elegans
Exon264494   135   X: 16600328-16600462 Caenorhabditis elegans
Exon264496   179   X: 16600509-16600687 Caenorhabditis elegans
Exon264498   118   X: 16600740-16600857 Caenorhabditis elegans
Exon264500   224   X: 16600910-16601133 Caenorhabditis elegans
Exon264503   450   X: 16601783-16602232 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F59C12.1a.1 16595238 16602232 1

1 Sequence

Length
2194

1 Sequence Ontology Term

Identifier Name Description
transcript