WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T01C8.3.1 Sequence Name  T01C8.3.1
Length (nt)  1299   Chromosome Location  X: 16780122-16783209
Chromosome . Primary Identifier  X Chromosome Location . Start  16780122
Chromosome Location . End  16783209 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T01C8.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020144 T01C8.3 T01C8.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01C8.3 T01C8.3 933   X: 16780293-16780412

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T01C8.3.1 16780122 16783209 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon264783   291   X: 16780122-16780412 Caenorhabditis elegans
Exon264784   75   X: 16780486-16780560 Caenorhabditis elegans
Exon264785   90   X: 16781078-16781167 Caenorhabditis elegans
Exon264786   81   X: 16781212-16781292 Caenorhabditis elegans
Exon264787   97   X: 16781339-16781435 Caenorhabditis elegans
Exon264788   50   X: 16781484-16781533 Caenorhabditis elegans
Exon264789   151   X: 16781575-16781725 Caenorhabditis elegans
Exon264790   77   X: 16781771-16781847 Caenorhabditis elegans
Exon264791   88   X: 16782778-16782865 Caenorhabditis elegans
Exon264792   299   X: 16782911-16783209 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T01C8.3.1 16780122 16783209 -1

1 Sequence

Length
1299

1 Sequence Ontology Term

Identifier Name Description
transcript