WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C30E1.4.1 Sequence Name  C30E1.4.1
Length (nt)  2369   Chromosome Location  X: 16923936-16928163
Chromosome . Primary Identifier  X Chromosome Location . Start  16923936
Chromosome Location . End  16928163 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C30E1.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016253 C30E1.4 C30E1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C30E1.4 C30E1.4 2229   X: 16923936-16924103

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C30E1.4.1 16923936 16928163 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon265039   168   X: 16923936-16924103 Caenorhabditis elegans
Exon265040   99   X: 16924143-16924241 Caenorhabditis elegans
Exon265041   90   X: 16924540-16924629 Caenorhabditis elegans
Exon265042   89   X: 16924755-16924843 Caenorhabditis elegans
Exon265043   51   X: 16924895-16924945 Caenorhabditis elegans
Exon265044   91   X: 16925012-16925102 Caenorhabditis elegans
Exon265045   90   X: 16925149-16925238 Caenorhabditis elegans
Exon265046   76   X: 16925708-16925783 Caenorhabditis elegans
Exon265047   69   X: 16925838-16925906 Caenorhabditis elegans
Exon265048   69   X: 16925955-16926023 Caenorhabditis elegans
Exon265049   181   X: 16926078-16926258 Caenorhabditis elegans
Exon265050   365   X: 16926305-16926669 Caenorhabditis elegans
Exon265051   137   X: 16927074-16927210 Caenorhabditis elegans
Exon265052   102   X: 16927267-16927368 Caenorhabditis elegans
Exon265053   146   X: 16927414-16927559 Caenorhabditis elegans
Exon265054   546   X: 16927618-16928163 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C30E1.4.1 16923936 16928163 1

1 Sequence

Length
2369

1 Sequence Ontology Term

Identifier Name Description
transcript