WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52G3.1.1 Sequence Name  F52G3.1.1
Length (nt)  3958   Chromosome Location  X: 16963871-16972818
Chromosome . Primary Identifier  X Chromosome Location . Start  16963871
Chromosome Location . End  16972818 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52G3.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018710 F52G3.1 F52G3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52G3.1 F52G3.1 3519   X: 16964144-16964249

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52G3.1.1 16963871 16972818 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon265077   84   X: 16963871-16963954 Caenorhabditis elegans
Exon265079   111   X: 16964139-16964249 Caenorhabditis elegans
Exon265080   135   X: 16965193-16965327 Caenorhabditis elegans
Exon265081   228   X: 16966013-16966240 Caenorhabditis elegans
Exon265082   213   X: 16966489-16966701 Caenorhabditis elegans
Exon265083   167   X: 16967952-16968118 Caenorhabditis elegans
Exon265084   73   X: 16968243-16968315 Caenorhabditis elegans
Exon265085   392   X: 16968503-16968894 Caenorhabditis elegans
Exon265086   241   X: 16969117-16969357 Caenorhabditis elegans
Exon265087   161   X: 16969421-16969581 Caenorhabditis elegans
Exon265088   358   X: 16969916-16970273 Caenorhabditis elegans
Exon265089   266   X: 16970328-16970593 Caenorhabditis elegans
Exon265090   839   X: 16970814-16971652 Caenorhabditis elegans
Exon265091   271   X: 16972019-16972289 Caenorhabditis elegans
Exon265092   419   X: 16972400-16972818 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52G3.1.1 16963871 16972818 1

1 Sequence

Length
3958

1 Sequence Ontology Term

Identifier Name Description
transcript