WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C08A9.3b.1 Sequence Name  C08A9.3b.1
Length (nt)  2220   Chromosome Location  X: 17087882-17091712
Chromosome . Primary Identifier  X Chromosome Location . Start  17087882
Chromosome Location . End  17091712 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C08A9.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015583 C08A9.3 C08A9.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C08A9.3b C08A9.3b 2220   X: 17087882-17088290

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C08A9.3b.1 17087882 17091712 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon265542   409   X: 17087882-17088290 Caenorhabditis elegans
Exon265544   146   X: 17088336-17088481 Caenorhabditis elegans
Exon265546   102   X: 17088529-17088630 Caenorhabditis elegans
Exon265548   137   X: 17088682-17088818 Caenorhabditis elegans
Exon265550   362   X: 17089221-17089582 Caenorhabditis elegans
Exon265553   181   X: 17089625-17089805 Caenorhabditis elegans
Exon265555   69   X: 17089852-17089920 Caenorhabditis elegans
Exon265557   69   X: 17090058-17090126 Caenorhabditis elegans
Exon265559   76   X: 17090170-17090245 Caenorhabditis elegans
Exon265561   90   X: 17090293-17090382 Caenorhabditis elegans
Exon265563   91   X: 17090424-17090514 Caenorhabditis elegans
Exon265565   51   X: 17090963-17091013 Caenorhabditis elegans
Exon265567   89   X: 17091063-17091151 Caenorhabditis elegans
Exon265569   90   X: 17091199-17091288 Caenorhabditis elegans
Exon265571   99   X: 17091336-17091434 Caenorhabditis elegans
Exon265572   159   X: 17091554-17091712 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C08A9.3b.1 17087882 17091712 -1

1 Sequence

Length
2220

1 Sequence Ontology Term

Identifier Name Description
transcript