WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C08A9.3a.1 Sequence Name  C08A9.3a.1
Length (nt)  2155   Chromosome Location  X: 17087882-17093299
Chromosome . Primary Identifier  X Chromosome Location . Start  17087882
Chromosome Location . End  17093299 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C08A9.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015583 C08A9.3 C08A9.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C08A9.3a C08A9.3a 2085   X: 17087882-17088290

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C08A9.3a.1 17087882 17093299 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon265541   409   X: 17087882-17088290 Caenorhabditis elegans
Exon265543   146   X: 17088336-17088481 Caenorhabditis elegans
Exon265545   102   X: 17088529-17088630 Caenorhabditis elegans
Exon265547   137   X: 17088682-17088818 Caenorhabditis elegans
Exon265549   362   X: 17089221-17089582 Caenorhabditis elegans
Exon265552   181   X: 17089625-17089805 Caenorhabditis elegans
Exon265554   69   X: 17089852-17089920 Caenorhabditis elegans
Exon265556   69   X: 17090058-17090126 Caenorhabditis elegans
Exon265558   76   X: 17090170-17090245 Caenorhabditis elegans
Exon265560   90   X: 17090293-17090382 Caenorhabditis elegans
Exon265562   91   X: 17090424-17090514 Caenorhabditis elegans
Exon265564   51   X: 17090963-17091013 Caenorhabditis elegans
Exon265566   89   X: 17091063-17091151 Caenorhabditis elegans
Exon265568   90   X: 17091199-17091288 Caenorhabditis elegans
Exon265570   99   X: 17091336-17091434 Caenorhabditis elegans
Exon265574   94   X: 17093206-17093299 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C08A9.3a.1 17087882 17093299 -1

1 Sequence

Length
2155

1 Sequence Ontology Term

Identifier Name Description
transcript