WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C53C11.3.1 Sequence Name  C53C11.3.1
Length (nt)  3486   Chromosome Location  X: 17318584-17326558
Chromosome . Primary Identifier  X Chromosome Location . Start  17318584
Chromosome Location . End  17326558 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C53C11.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004220 ptr-5 C53C11.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C53C11.3 C53C11.3 2886   X: 17318635-17318643

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C53C11.3.1 17318584 17326558 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon265769   60   X: 17318584-17318643 Caenorhabditis elegans
Exon265770   106   X: 17319077-17319182 Caenorhabditis elegans
Exon265771   119   X: 17319333-17319451 Caenorhabditis elegans
Exon265772   113   X: 17319506-17319618 Caenorhabditis elegans
Exon265773   114   X: 17320219-17320332 Caenorhabditis elegans
Exon265774   106   X: 17320423-17320528 Caenorhabditis elegans
Exon265775   222   X: 17320986-17321207 Caenorhabditis elegans
Exon265776   199   X: 17321258-17321456 Caenorhabditis elegans
Exon265777   82   X: 17321805-17321886 Caenorhabditis elegans
Exon265778   128   X: 17321937-17322064 Caenorhabditis elegans
Exon265779   174   X: 17322109-17322282 Caenorhabditis elegans
Exon265781   146   X: 17322631-17322776 Caenorhabditis elegans
Exon265782   548   X: 17323184-17323731 Caenorhabditis elegans
Exon265783   108   X: 17324140-17324247 Caenorhabditis elegans
Exon265784   85   X: 17324293-17324377 Caenorhabditis elegans
Exon265785   106   X: 17324427-17324532 Caenorhabditis elegans
Exon265786   119   X: 17324577-17324695 Caenorhabditis elegans
Exon265787   159   X: 17324906-17325064 Caenorhabditis elegans
Exon265788   72   X: 17325689-17325760 Caenorhabditis elegans
Exon265789   720   X: 17325839-17326558 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C53C11.3.1 17318584 17326558 1

1 Sequence

Length
3486

1 Sequence Ontology Term

Identifier Name Description
transcript