WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C53C11.3 Sequence Name  C53C11.3
Length (nt)  2886   Chromosome Location  X: 17318635-17318643
Chromosome . Primary Identifier  X Chromosome Location . Start  17318635
Chromosome Location . End  17318643
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C53C11.3

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE34277 PTR-5 109.4 961 Caenorhabditis elegans
 

Other

4 RNAi

WormBase ID
WBRNAi00043086
WBRNAi00076945
WBRNAi00076913
WBRNAi00012355

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C53C11.3 17318635 17318643 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004220 ptr-5 C53C11.3 Caenorhabditis elegans

20 Locations


Feature . Primary Identifier
Start End Strand
CDS:C53C11.3 17318635 17318643 1
CDS:C53C11.3 17319077 17319182 1
CDS:C53C11.3 17319333 17319451 1
CDS:C53C11.3 17319506 17319618 1
CDS:C53C11.3 17320219 17320332 1
CDS:C53C11.3 17320423 17320528 1
CDS:C53C11.3 17320986 17321207 1
CDS:C53C11.3 17321258 17321456 1
CDS:C53C11.3 17321805 17321886 1
CDS:C53C11.3 17321937 17322064 1
CDS:C53C11.3 17322109 17322282 1
CDS:C53C11.3 17322631 17322776 1
CDS:C53C11.3 17323184 17323731 1
CDS:C53C11.3 17324140 17324247 1
CDS:C53C11.3 17324293 17324377 1
CDS:C53C11.3 17324427 17324532 1
CDS:C53C11.3 17324577 17324695 1
CDS:C53C11.3 17324906 17325064 1
CDS:C53C11.3 17325689 17325760 1
CDS:C53C11.3 17325839 17326009 1

1 Sequence

Length
2886

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C53C11.3.1 C53C11.3.1 3486   X: 17318584-17326558