WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F39B3.2.1 Sequence Name  F39B3.2.1
Length (nt)  1782   Chromosome Location  X: 17567565-17579879
Chromosome . Primary Identifier  X Chromosome Location . Start  17567565
Chromosome Location . End  17579879 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F39B3.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018191 frpr-7 F39B3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F39B3.2 F39B3.2 1245   X: 17567984-17568014

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F39B3.2.1 17567565 17579879 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon266282   450   X: 17567565-17568014 Caenorhabditis elegans
Exon266284   113   X: 17568610-17568722 Caenorhabditis elegans
Exon266286   207   X: 17568770-17568976 Caenorhabditis elegans
Exon266288   94   X: 17569030-17569123 Caenorhabditis elegans
Exon266290   103   X: 17569185-17569287 Caenorhabditis elegans
Exon266292   103   X: 17569341-17569443 Caenorhabditis elegans
Exon266294   145   X: 17570396-17570540 Caenorhabditis elegans
Exon266296   239   X: 17570607-17570845 Caenorhabditis elegans
Exon266298   80   X: 17571390-17571469 Caenorhabditis elegans
Exon266300   164   X: 17571778-17571941 Caenorhabditis elegans
Exon266304   84   X: 17579796-17579879 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F39B3.2.1 17567565 17579879 -1

1 Sequence

Length
1782

1 Sequence Ontology Term

Identifier Name Description
transcript