WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y53H1C.1a.1 Sequence Name  Y53H1C.1a.1
Length (nt)  2087   Chromosome Location  I: 11388682-11396660
Chromosome . Primary Identifier  I Chromosome Location . Start  11388682
Chromosome Location . End  11396660 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y53H1C.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000010 aat-9 Y53H1C.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y53H1C.1a Y53H1C.1a 1626   I: 11389141-11389238

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y53H1C.1a.1 11388682 11396660 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon29705   557   I: 11388682-11389238 Caenorhabditis elegans
Exon29706   129   I: 11389875-11390003 Caenorhabditis elegans
Exon29708   100   I: 11390089-11390188 Caenorhabditis elegans
Exon29711   187   I: 11390948-11391134 Caenorhabditis elegans
Exon29715   138   I: 11392048-11392185 Caenorhabditis elegans
Exon29722   228   I: 11393292-11393519 Caenorhabditis elegans
Exon29724   154   I: 11393722-11393875 Caenorhabditis elegans
Exon29726   132   I: 11394747-11394878 Caenorhabditis elegans
Exon29728   81   I: 11394927-11395007 Caenorhabditis elegans
Exon29730   109   I: 11395069-11395177 Caenorhabditis elegans
Exon29732   179   I: 11396254-11396432 Caenorhabditis elegans
Exon29734   93   I: 11396568-11396660 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y53H1C.1a.1 11388682 11396660 -1

1 Sequence

Length
2087

1 Sequence Ontology Term

Identifier Name Description
transcript