WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y40B1A.3c.1 Sequence Name  Y40B1A.3c.1
Length (nt)  1856   Chromosome Location  I: 13347066-13358968
Chromosome . Primary Identifier  I Chromosome Location . Start  13347066
Chromosome Location . End  13358968 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y40B1A.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012734 wac-1.1 Y40B1A.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y40B1A.3c Y40B1A.3c 1548   I: 13347080-13347166

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y40B1A.3c.1 13347066 13358968 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon34101   101   I: 13347066-13347166 Caenorhabditis elegans
Exon34103   99   I: 13347520-13347618 Caenorhabditis elegans
Exon34111   239   I: 13353007-13353245 Caenorhabditis elegans
Exon34113   166   I: 13354060-13354225 Caenorhabditis elegans
Exon34120   203   I: 13354277-13354479 Caenorhabditis elegans
Exon34125   183   I: 13355612-13355794 Caenorhabditis elegans
Exon34130   134   I: 13356474-13356607 Caenorhabditis elegans
Exon34135   173   I: 13356736-13356908 Caenorhabditis elegans
Exon34140   138   I: 13357727-13357864 Caenorhabditis elegans
Exon34146   420   I: 13358549-13358968 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y40B1A.3c.1 13347066 13358968 1

1 Sequence

Length
1856

1 Sequence Ontology Term

Identifier Name Description
transcript