WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09E8.1a.1 Sequence Name  C09E8.1a.1
Length (nt)  2505   Chromosome Location  II: 556485-564061
Chromosome . Primary Identifier  II Chromosome Location . Start  556485
Chromosome Location . End  564061 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09E8.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015644 C09E8.1 C09E8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09E8.1a C09E8.1a 2352   II: 556552-556640

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09E8.1a.1 556485 564061 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon39134   156   II: 556485-556640 Caenorhabditis elegans
Exon39137   119   II: 557024-557142 Caenorhabditis elegans
Exon39139   146   II: 557303-557448 Caenorhabditis elegans
Exon39141   92   II: 557502-557593 Caenorhabditis elegans
Exon39143   352   II: 558200-558551 Caenorhabditis elegans
Exon39145   132   II: 558604-558735 Caenorhabditis elegans
Exon39147   207   II: 559306-559512 Caenorhabditis elegans
Exon39149   129   II: 559559-559687 Caenorhabditis elegans
Exon39151   91   II: 560031-560121 Caenorhabditis elegans
Exon39153   137   II: 560169-560305 Caenorhabditis elegans
Exon39159   219   II: 561834-562052 Caenorhabditis elegans
Exon39161   323   II: 562538-562860 Caenorhabditis elegans
Exon39163   128   II: 563115-563242 Caenorhabditis elegans
Exon39165   274   II: 563788-564061 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09E8.1a.1 556485 564061 1

1 Sequence

Length
2505

1 Sequence Ontology Term

Identifier Name Description
transcript