WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F18A12.8a.1 Sequence Name  F18A12.8a.1
Length (nt)  2887   Chromosome Location  II: 3420663-3425533
Chromosome . Primary Identifier  II Chromosome Location . Start  3420663
Chromosome Location . End  3425533 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F18A12.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017557 nep-11 F18A12.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F18A12.8a F18A12.8a 2547   II: 3421002-3421178

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F18A12.8a.1 3420663 3425533 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon45153   516   II: 3420663-3421178 Caenorhabditis elegans
Exon45155   165   II: 3421283-3421447 Caenorhabditis elegans
Exon45156   251   II: 3421668-3421918 Caenorhabditis elegans
Exon45158   166   II: 3421965-3422130 Caenorhabditis elegans
Exon45161   624   II: 3422375-3422998 Caenorhabditis elegans
Exon45163   102   II: 3423215-3423316 Caenorhabditis elegans
Exon45165   105   II: 3423362-3423466 Caenorhabditis elegans
Exon45167   181   II: 3423514-3423694 Caenorhabditis elegans
Exon45169   257   II: 3423743-3423999 Caenorhabditis elegans
Exon45171   348   II: 3424413-3424760 Caenorhabditis elegans
Exon45173   67   II: 3424811-3424877 Caenorhabditis elegans
Exon45176   105   II: 3425429-3425533 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F18A12.8a.1 3420663 3425533 -1

1 Sequence

Length
2887

1 Sequence Ontology Term

Identifier Name Description
transcript