WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08H4.1c.1 Sequence Name  T08H4.1c.1
Length (nt)  3450   Chromosome Location  II: 4107281-4127529
Chromosome . Primary Identifier  II Chromosome Location . Start  4107281
Chromosome Location . End  4127529 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08H4.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006476 rhgf-2 T08H4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08H4.1c T08H4.1c 3450   II: 4107281-4107630

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T08H4.1c.1 4107281 4127529 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon46799   350   II: 4107281-4107630 Caenorhabditis elegans
Exon46806   166   II: 4109210-4109375 Caenorhabditis elegans
Exon46816   142   II: 4111906-4112047 Caenorhabditis elegans
Exon46824   123   II: 4112482-4112604 Caenorhabditis elegans
Exon46834   131   II: 4120257-4120387 Caenorhabditis elegans
Exon46843   80   II: 4121113-4121192 Caenorhabditis elegans
Exon46852   378   II: 4121965-4122342 Caenorhabditis elegans
Exon46861   268   II: 4122395-4122662 Caenorhabditis elegans
Exon46870   96   II: 4122733-4122828 Caenorhabditis elegans
Exon46879   784   II: 4123244-4124027 Caenorhabditis elegans
Exon46888   647   II: 4124421-4125067 Caenorhabditis elegans
Exon46897   108   II: 4125112-4125219 Caenorhabditis elegans
Exon46906   167   II: 4125277-4125443 Caenorhabditis elegans
Exon46910   10   II: 4127520-4127529 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T08H4.1c.1 4107281 4127529 1

1 Sequence

Length
3450

1 Sequence Ontology Term

Identifier Name Description
transcript