WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C15F1.3a.1 Sequence Name  C15F1.3a.1
Length (nt)  4663   Chromosome Location  II: 6955384-6965673
Chromosome . Primary Identifier  II Chromosome Location . Start  6955384
Chromosome Location . End  6965673 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C15F1.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006605 tra-2 C15F1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C15F1.3a C15F1.3a 4428   II: 6955619-6956383

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C15F1.3a.1 6955384 6965673 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

23 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon55337   1000   II: 6955384-6956383 Caenorhabditis elegans
Exon55339   384   II: 6956433-6956816 Caenorhabditis elegans
Exon55342   149   II: 6956957-6957105 Caenorhabditis elegans
Exon55345   168   II: 6958952-6959119 Caenorhabditis elegans
Exon55347   103   II: 6959165-6959267 Caenorhabditis elegans
Exon55349   109   II: 6959313-6959421 Caenorhabditis elegans
Exon55351   95   II: 6961573-6961667 Caenorhabditis elegans
Exon55353   180   II: 6962012-6962191 Caenorhabditis elegans
Exon55355   74   II: 6962354-6962427 Caenorhabditis elegans
Exon55357   101   II: 6962476-6962576 Caenorhabditis elegans
Exon55359   95   II: 6962622-6962716 Caenorhabditis elegans
Exon55361   78   II: 6962762-6962839 Caenorhabditis elegans
Exon55363   97   II: 6962892-6962988 Caenorhabditis elegans
Exon55365   115   II: 6963048-6963162 Caenorhabditis elegans
Exon55367   264   II: 6963214-6963477 Caenorhabditis elegans
Exon55369   136   II: 6963536-6963671 Caenorhabditis elegans
Exon55371   681   II: 6963721-6964401 Caenorhabditis elegans
Exon55373   132   II: 6964456-6964587 Caenorhabditis elegans
Exon55375   113   II: 6964643-6964755 Caenorhabditis elegans
Exon55377   196   II: 6964811-6965006 Caenorhabditis elegans
Exon55379   97   II: 6965057-6965153 Caenorhabditis elegans
Exon55381   113   II: 6965204-6965316 Caenorhabditis elegans
Exon55383   183   II: 6965491-6965673 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C15F1.3a.1 6955384 6965673 -1

1 Sequence

Length
4663

1 Sequence Ontology Term

Identifier Name Description
transcript