WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK1290.4a.1 Sequence Name  ZK1290.4a.1
Length (nt)  2993   Chromosome Location  II: 7538180-7543007
Chromosome . Primary Identifier  II Chromosome Location . Start  7538180
Chromosome Location . End  7543007 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK1290.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003592 nfi-1 ZK1290.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK1290.4a ZK1290.4a 2424   II: 7538280-7538297

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZK1290.4a.1 7538180 7543007 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon57256   118   II: 7538180-7538297 Caenorhabditis elegans
Exon57261   141   II: 7538700-7538840 Caenorhabditis elegans
Exon57265   75   II: 7538889-7538963 Caenorhabditis elegans
Exon57266   81   II: 7539019-7539099 Caenorhabditis elegans
Exon57271   99   II: 7539155-7539253 Caenorhabditis elegans
Exon57276   132   II: 7539309-7539440 Caenorhabditis elegans
Exon57281   355   II: 7539497-7539851 Caenorhabditis elegans
Exon57287   259   II: 7540267-7540525 Caenorhabditis elegans
Exon57292   296   II: 7540575-7540870 Caenorhabditis elegans
Exon57297   138   II: 7540913-7541050 Caenorhabditis elegans
Exon57302   133   II: 7541315-7541447 Caenorhabditis elegans
Exon57307   287   II: 7541495-7541781 Caenorhabditis elegans
Exon57312   148   II: 7541831-7541978 Caenorhabditis elegans
Exon57317   100   II: 7542159-7542258 Caenorhabditis elegans
Exon57326   631   II: 7542377-7543007 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZK1290.4a.1 7538180 7543007 1

1 Sequence

Length
2993

1 Sequence Ontology Term

Identifier Name Description
transcript