WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T06D8.1c.1 Sequence Name  T06D8.1c.1
Length (nt)  10266   Chromosome Location  II: 11203822-11220238
Chromosome . Primary Identifier  II Chromosome Location . Start  11203822
Chromosome Location . End  11220238 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T06D8.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011522 srap-1 T06D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T06D8.1c T06D8.1c 10266   II: 11203822-11203948

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T06D8.1c.1 11203822 11220238 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon68362   127   II: 11203822-11203948 Caenorhabditis elegans
Exon68375   201   II: 11206666-11206866 Caenorhabditis elegans
Exon68387   90   II: 11207002-11207091 Caenorhabditis elegans
Exon68399   123   II: 11207472-11207594 Caenorhabditis elegans
Exon68411   72   II: 11207650-11207721 Caenorhabditis elegans
Exon68431   102   II: 11208446-11208547 Caenorhabditis elegans
Exon68435   79   II: 11208730-11208808 Caenorhabditis elegans
Exon68443   173   II: 11208872-11209044 Caenorhabditis elegans
Exon68451   237   II: 11209127-11209363 Caenorhabditis elegans
Exon68463   119   II: 11209462-11209580 Caenorhabditis elegans
Exon68475   142   II: 11209647-11209788 Caenorhabditis elegans
Exon68487   525   II: 11209842-11210366 Caenorhabditis elegans
Exon68499   489   II: 11210415-11210903 Caenorhabditis elegans
Exon68516   1062   II: 11210951-11212012 Caenorhabditis elegans
Exon68523   5741   II: 11212146-11217886 Caenorhabditis elegans
Exon68535   123   II: 11217935-11218057 Caenorhabditis elegans
Exon68547   114   II: 11218100-11218213 Caenorhabditis elegans
Exon68559   103   II: 11218265-11218367 Caenorhabditis elegans
Exon68583   84   II: 11219458-11219541 Caenorhabditis elegans
Exon68595   131   II: 11219589-11219719 Caenorhabditis elegans
Exon68607   163   II: 11219762-11219924 Caenorhabditis elegans
Exon68617   266   II: 11219973-11220238 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T06D8.1c.1 11203822 11220238 1

1 Sequence

Length
10266

1 Sequence Ontology Term

Identifier Name Description
transcript