WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C47D12.1a Sequence Name  C47D12.1a
Length (nt)  12189   Chromosome Location  II: 11661800-11661982
Chromosome . Primary Identifier  II Chromosome Location . Start  11661800
Chromosome Location . End  11661982
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C47D12.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE53926 TRR-1, isoform a 466.6 4062 Caenorhabditis elegans
 

Other

57 RNAi

WormBase ID
WBRNAi00078292
WBRNAi00092132
WBRNAi00064509
WBRNAi00064807
WBRNAi00064848
WBRNAi00042662
WBRNAi00024841
WBRNAi00008525
WBRNAi00000679
WBRNAi00068551
WBRNAi00068553
WBRNAi00068552
WBRNAi00068555
WBRNAi00068554
WBRNAi00068556
WBRNAi00064491
WBRNAi00064517
WBRNAi00064564
WBRNAi00064569
WBRNAi00064590
WBRNAi00064623
WBRNAi00064632
WBRNAi00064734
WBRNAi00064752
WBRNAi00064779
WBRNAi00064788
WBRNAi00062979
WBRNAi00062975
WBRNAi00062976
WBRNAi00062977

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C47D12.1a 11661800 11661982 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007028 trr-1 C47D12.1 Caenorhabditis elegans

22 Locations


Feature . Primary Identifier
Start End Strand
CDS:C47D12.1a 11661800 11661982 -1
CDS:C47D12.1a 11662033 11662477 -1
CDS:C47D12.1a 11662532 11663916 -1
CDS:C47D12.1a 11663972 11664383 -1
CDS:C47D12.1a 11664436 11665169 -1
CDS:C47D12.1a 11665218 11665504 -1
CDS:C47D12.1a 11665558 11665894 -1
CDS:C47D12.1a 11666508 11666722 -1
CDS:C47D12.1a 11666774 11667667 -1
CDS:C47D12.1a 11667709 11667893 -1
CDS:C47D12.1a 11667937 11668082 -1
CDS:C47D12.1a 11668133 11668745 -1
CDS:C47D12.1a 11668795 11668908 -1
CDS:C47D12.1a 11669001 11669816 -1
CDS:C47D12.1a 11670084 11672277 -1
CDS:C47D12.1a 11672332 11672707 -1
CDS:C47D12.1a 11672769 11673155 -1
CDS:C47D12.1a 11673201 11674319 -1
CDS:C47D12.1a 11674364 11674487 -1
CDS:C47D12.1a 11674533 11674831 -1
CDS:C47D12.1a 11674886 11675671 -1
CDS:C47D12.1a 11675719 11675856 -1

1 Sequence

Length
12189

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C47D12.1a.1 C47D12.1a.1 12478   II: 11661582-11675927