WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y46G5A.1b.1 Sequence Name  Y46G5A.1b.1
Length (nt)  3490   Chromosome Location  II: 12694453-12725480
Chromosome . Primary Identifier  II Chromosome Location . Start  12694453
Chromosome Location . End  12725480 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y46G5A.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012894 tbc-17 Y46G5A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y46G5A.1b Y46G5A.1b 3030   II: 12694453-12694538

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y46G5A.1b.1 12694453 12725480 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon72043   86   II: 12694453-12694538 Caenorhabditis elegans
Exon72045   181   II: 12694765-12694945 Caenorhabditis elegans
Exon72048   320   II: 12696129-12696448 Caenorhabditis elegans
Exon72051   284   II: 12697088-12697371 Caenorhabditis elegans
Exon72054   289   II: 12698776-12699064 Caenorhabditis elegans
Exon72057   181   II: 12700617-12700797 Caenorhabditis elegans
Exon72060   70   II: 12701656-12701725 Caenorhabditis elegans
Exon72065   172   II: 12716760-12716931 Caenorhabditis elegans
Exon72068   351   II: 12716992-12717342 Caenorhabditis elegans
Exon72071   428   II: 12717825-12718252 Caenorhabditis elegans
Exon72074   125   II: 12718769-12718893 Caenorhabditis elegans
Exon72077   148   II: 12719964-12720111 Caenorhabditis elegans
Exon72080   167   II: 12721100-12721266 Caenorhabditis elegans
Exon72082   100   II: 12721816-12721915 Caenorhabditis elegans
Exon72086   140   II: 12723583-12723722 Caenorhabditis elegans
Exon72088   448   II: 12725033-12725480 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y46G5A.1b.1 12694453 12725480 1

1 Sequence

Length
3490

1 Sequence Ontology Term

Identifier Name Description
transcript