WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y46G5A.29.1 Sequence Name  Y46G5A.29.1
Length (nt)  2503   Chromosome Location  II: 12856200-12862058
Chromosome . Primary Identifier  II Chromosome Location . Start  12856200
Chromosome Location . End  12862058 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y46G5A.29.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012917 Y46G5A.29 Y46G5A.29 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y46G5A.29 Y46G5A.29 2271   II: 12856220-12856338

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y46G5A.29.1 12856200 12862058 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon72306   139   II: 12856200-12856338 Caenorhabditis elegans
Exon72308   128   II: 12857040-12857167 Caenorhabditis elegans
Exon72309   129   II: 12857220-12857348 Caenorhabditis elegans
Exon72310   127   II: 12857394-12857520 Caenorhabditis elegans
Exon72311   412   II: 12857592-12858003 Caenorhabditis elegans
Exon72312   187   II: 12858376-12858562 Caenorhabditis elegans
Exon72313   225   II: 12858618-12858842 Caenorhabditis elegans
Exon72314   111   II: 12858897-12859007 Caenorhabditis elegans
Exon72315   111   II: 12859306-12859416 Caenorhabditis elegans
Exon72316   141   II: 12859460-12859600 Caenorhabditis elegans
Exon72317   196   II: 12859643-12859838 Caenorhabditis elegans
Exon72318   597   II: 12861462-12862058 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y46G5A.29.1 12856200 12862058 1

1 Sequence

Length
2503

1 Sequence Ontology Term

Identifier Name Description
transcript