Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:F42G4.11.1 | F42G4.11.1 |
501
 |
II: 13056968-13059629 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:F42G4.11 | F42G4.11 |
501
|
II: 13056968-13057008 |
69 Allele
| Public Name |
|---|
| gk963801 |
| gk963053 |
| gk962684 |
| gk962526 |
| gk962527 |
| WBVar01692099 |
| WBVar00244746 |
| gk964472 |
| WBVar01560973 |
| WBVar01560972 |
| WBVar01560971 |
| WBVar01560970 |
| WBVar01560977 |
| WBVar01560976 |
| WBVar01560975 |
| WBVar01560974 |
| WBVar01936432 |
| WBVar00003703 |
| WBVar01380775 |
| gk158666 |
| WBVar00003708 |
| WBVar01249236 |
| WBVar00003713 |
| WBVar01315793 |
| WBVar01249240 |
| WBVar01249238 |
| gk158667 |
| syb7030 |
| WBVar02033891 |
| WBVar02033890 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00306133 | 13056968 | 13059629 | 1 |
4 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. | N.A. | WBPaper00026929:sir-2.1_overexpression_regulated | |
| Germline-enriched and sex-biased expression profile cluster C. | hierarchical clustering | [cgc6390]:Cluster_C | |
| male soma-enriched | Comparisons were made between genotypes by subtracting the mean log value of one ratio from another, and the significance of the difference was evaluated using Student t-test for two populations. For the fem-3(gf) versus fem-1(lf) direct comparison, authors performed the same analysis, except they used a Students t-test for one population. Author chose a combination of a twofold difference with a t value exceeding 99% confidence (P < 0.01), because these criteria allowed the inclusion of essentially all genes that had previously been identified as germline-enriched in a wt/glp-4 hermaphrodite comparison. Additionally, requiring a twofold difference reduced false positives, as the number of genes with two-fold difference and a P<0.01 only included ~100 genes more than with P < 0.001, and almost all genes showed germline expression by in situ hybridization. | [cgc6390]:male_soma-enriched | |
| Genome-wide analysis of developmental and sex-regulated gene expression profile. | self-organizing map | cgc4489_group_20 |
1 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| Expr16513 | To understand which cells or tissues of C. elegans may express azyx-1, we generated an extrachromosomal azyx-1 reporter strain (LSC1959). We observed a strong fluorescent signal in body wall muscle, vulval muscle, and very faintly in unidentified structures in the head and tail. This fluorescence pattern was consistent, as observed in L4 and adult worms. |