Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:C01B9.4.1 | C01B9.4.1 |
217
 |
II: 13770854-13783980 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:C01B9.4 | C01B9.4 |
150
|
II: 13770921-13770988 |
480 Allele
| Public Name |
|---|
| gk963801 |
| gk963053 |
| gk962684 |
| WBVar01562571 |
| WBVar01539959 |
| gk458975 |
| gk693591 |
| WBVar00010258 |
| gk934668 |
| WBVar01391178 |
| gk736481 |
| gk328695 |
| gk610272 |
| WBVar00010263 |
| gk540667 |
| gk338792 |
| WBVar01895519 |
| WBVar02086467 |
| WBVar00010268 |
| WBVar01895518 |
| WBVar02029493 |
| WBVar02124948 |
| WBVar02010166 |
| gk160378 |
| gk160377 |
| otn15888 |
| otn15889 |
| WBVar01606111 |
| WBVar01606112 |
| WBVar01606113 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00194890 | 13770854 | 13783980 | -1 |
6 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly decreased expression in dissected female germline comparing to in dissected male germline. | Log2 Fold change > 2 or <-1, p-value < 0.05. | WBPaper00053599:female_vs_male_downregulated | |
| Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2. | Student's t-test, fold change > 2, p-value < 0.05. | WBPaper00055386:daf-2(e1370)_upregulated | |
| Transcripts that showed significantly decreased expression in jmjd-3.1p::jmjd-3.1 comparing to in N2. | DESeq2 Benjamini-Hochberg adjusted p-value < 0.05. | WBPaper00049545:jmjd-3.1(+)_downregulated | |
| moderate static magnetic field | Transcripts that showed significantly decreased expression after exposure to moderate static magnetic field. | N.A. | WBPaper00064509:static-magnetic-field_downregulated |
| Transcripts that showed significantly increased expression in hlh-26(ok1453) animals exposed to E. faecium for 8 hours, comparing to N2 animals exposed to E. faecium for 8 hours. | Fold change > 2. | WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium | |
| Transcripts that showed significantly decreased expression in csr-1a(tor159) comparing to in N2 at 20C. | DESeq2, fold change > 2, p-value < 0.05. | WBPaper00061753:csr-1(tor159)_downregulated_20C |
2 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| Expr1143407 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015 | |||
| Expr2018498 | Single cell embryonic expression. Only cell types with an expression fraction of greater 0.2 of the maximum expressed fraction are labeled (Full data can be downloaded from http://caltech.wormbase.org/pub/wormbase/datasets-published/packer2019/). The colors represent the broad cell class to which the cell type has been assigned. The size of the point is proportional to the log2 of the numbers of cells in the dataset of that cell type. Interactive visualizations are available as a web app (https://cello.shinyapps.io/celegans/) and can also be installed as an R package (https://github.com/qinzhu/VisCello.celegans). |