WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55D5A.5a.1 Sequence Name  Y55D5A.5a.1
Length (nt)  7044   Chromosome Location  III: 2994514-3028800
Chromosome . Primary Identifier  III Chromosome Location . Start  2994514
Chromosome Location . End  3028800 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55D5A.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000898 daf-2 Y55D5A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55D5A.5a Y55D5A.5a 5541   III: 2995919-2996014

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55D5A.5a.1 2994514 3028800 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon82196   1501   III: 2994514-2996014 Caenorhabditis elegans
Exon82203   276   III: 2997060-2997335 Caenorhabditis elegans
Exon82210   186   III: 2998662-2998847 Caenorhabditis elegans
Exon82218   1531   III: 2999852-3001382 Caenorhabditis elegans
Exon82224   335   III: 3004566-3004900 Caenorhabditis elegans
Exon82230   346   III: 3005692-3006037 Caenorhabditis elegans
Exon82237   283   III: 3008610-3008892 Caenorhabditis elegans
Exon82244   113   III: 3010411-3010523 Caenorhabditis elegans
Exon82249   1393   III: 3012186-3013578 Caenorhabditis elegans
Exon82254   169   III: 3014588-3014756 Caenorhabditis elegans
Exon82259   106   III: 3015363-3015468 Caenorhabditis elegans
Exon82264   177   III: 3016166-3016342 Caenorhabditis elegans
Exon82269   122   III: 3016921-3017042 Caenorhabditis elegans
Exon82274   132   III: 3019170-3019301 Caenorhabditis elegans
Exon82280   115   III: 3019559-3019673 Caenorhabditis elegans
Exon82285   97   III: 3023078-3023174 Caenorhabditis elegans
Exon82289   162   III: 3028639-3028800 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55D5A.5a.1 2994514 3028800 -1

1 Sequence

Length
7044

1 Sequence Ontology Term

Identifier Name Description
transcript