WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55D5A.5c.1 Sequence Name  Y55D5A.5c.1
Length (nt)  7325   Chromosome Location  III: 2994544-3040846
Chromosome . Primary Identifier  III Chromosome Location . Start  2994544
Chromosome Location . End  3040846 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55D5A.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000898 daf-2 Y55D5A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55D5A.5c Y55D5A.5c 5787   III: 2995919-2996014

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55D5A.5c.1 2994544 3040846 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon82197   1471   III: 2994544-2996014 Caenorhabditis elegans
Exon82204   276   III: 2997060-2997335 Caenorhabditis elegans
Exon82211   186   III: 2998662-2998847 Caenorhabditis elegans
Exon82219   1531   III: 2999852-3001382 Caenorhabditis elegans
Exon82225   335   III: 3004566-3004900 Caenorhabditis elegans
Exon82231   346   III: 3005692-3006037 Caenorhabditis elegans
Exon82236   246   III: 3006979-3007224 Caenorhabditis elegans
Exon82238   283   III: 3008610-3008892 Caenorhabditis elegans
Exon82245   113   III: 3010411-3010523 Caenorhabditis elegans
Exon82250   1393   III: 3012186-3013578 Caenorhabditis elegans
Exon82255   169   III: 3014588-3014756 Caenorhabditis elegans
Exon82260   106   III: 3015363-3015468 Caenorhabditis elegans
Exon82265   177   III: 3016166-3016342 Caenorhabditis elegans
Exon82270   122   III: 3016921-3017042 Caenorhabditis elegans
Exon82275   132   III: 3019170-3019301 Caenorhabditis elegans
Exon82281   115   III: 3019559-3019673 Caenorhabditis elegans
Exon82286   97   III: 3023078-3023174 Caenorhabditis elegans
Exon82290   162   III: 3028639-3028800 Caenorhabditis elegans
Exon82292   65   III: 3040782-3040846 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55D5A.5c.1 2994544 3040846 -1

1 Sequence

Length
7325

1 Sequence Ontology Term

Identifier Name Description
transcript