WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55D5A.5d.1 Sequence Name  Y55D5A.5d.1
Length (nt)  5400   Chromosome Location  III: 2995919-3023097
Chromosome . Primary Identifier  III Chromosome Location . Start  2995919
Chromosome Location . End  3023097 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55D5A.5d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000898 daf-2 Y55D5A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55D5A.5d Y55D5A.5d 5400   III: 2995919-2996014

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55D5A.5d.1 2995919 3023097 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon82201   96   III: 2995919-2996014 Caenorhabditis elegans
Exon82205   276   III: 2997060-2997335 Caenorhabditis elegans
Exon82212   186   III: 2998662-2998847 Caenorhabditis elegans
Exon82220   1531   III: 2999852-3001382 Caenorhabditis elegans
Exon82226   335   III: 3004566-3004900 Caenorhabditis elegans
Exon82232   346   III: 3005692-3006037 Caenorhabditis elegans
Exon82239   283   III: 3008610-3008892 Caenorhabditis elegans
Exon82246   113   III: 3010411-3010523 Caenorhabditis elegans
Exon82251   1393   III: 3012186-3013578 Caenorhabditis elegans
Exon82256   169   III: 3014588-3014756 Caenorhabditis elegans
Exon82261   106   III: 3015363-3015468 Caenorhabditis elegans
Exon82266   177   III: 3016166-3016342 Caenorhabditis elegans
Exon82271   122   III: 3016921-3017042 Caenorhabditis elegans
Exon82276   132   III: 3019170-3019301 Caenorhabditis elegans
Exon82282   115   III: 3019559-3019673 Caenorhabditis elegans
Exon82284   20   III: 3023078-3023097 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55D5A.5d.1 2995919 3023097 -1

1 Sequence

Length
5400

1 Sequence Ontology Term

Identifier Name Description
transcript