WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52C9.1.1 Sequence Name  F52C9.1.1
Length (nt)  4234   Chromosome Location  III: 5326623-5333620
Chromosome . Primary Identifier  III Chromosome Location . Start  5326623
Chromosome Location . End  5333620 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52C9.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018672 sorf-2 F52C9.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52C9.1 F52C9.1 4149   III: 5326631-5326806

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52C9.1.1 5326623 5333620 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon88482   184   III: 5326623-5326806 Caenorhabditis elegans
Exon88483   726   III: 5327221-5327946 Caenorhabditis elegans
Exon88484   218   III: 5328218-5328435 Caenorhabditis elegans
Exon88485   149   III: 5328525-5328673 Caenorhabditis elegans
Exon88486   135   III: 5328774-5328908 Caenorhabditis elegans
Exon88487   138   III: 5329297-5329434 Caenorhabditis elegans
Exon88488   334   III: 5329481-5329814 Caenorhabditis elegans
Exon88489   503   III: 5329859-5330361 Caenorhabditis elegans
Exon88490   351   III: 5330528-5330878 Caenorhabditis elegans
Exon88491   159   III: 5331099-5331257 Caenorhabditis elegans
Exon88492   350   III: 5331528-5331877 Caenorhabditis elegans
Exon88493   123   III: 5331934-5332056 Caenorhabditis elegans
Exon88494   362   III: 5332102-5332463 Caenorhabditis elegans
Exon88495   107   III: 5332587-5332693 Caenorhabditis elegans
Exon88496   170   III: 5333180-5333349 Caenorhabditis elegans
Exon88497   225   III: 5333396-5333620 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52C9.1.1 5326623 5333620 1

1 Sequence

Length
4234

1 Sequence Ontology Term

Identifier Name Description
transcript