WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y42G9A.4r.3 Sequence Name  Y42G9A.4r.3
Length (nt)  2801   Chromosome Location  III: 6124070-6136278
Chromosome . Primary Identifier  III Chromosome Location . Start  6124070
Chromosome Location . End  6136278 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y42G9A.4r.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021534 mvk-1 Y42G9A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y42G9A.4r Y42G9A.4r 225   III: 6124845-6125020

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y42G9A.4r.3 6124070 6136278 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon91050   951   III: 6124070-6125020 Caenorhabditis elegans
Exon91098   154   III: 6125493-6125646 Caenorhabditis elegans
Exon91127   135   III: 6126670-6126804 Caenorhabditis elegans
Exon91153   60   III: 6127038-6127097 Caenorhabditis elegans
Exon91181   214   III: 6127610-6127823 Caenorhabditis elegans
Exon91208   49   III: 6127873-6127921 Caenorhabditis elegans
Exon91224   63   III: 6128322-6128384 Caenorhabditis elegans
Exon91247   127   III: 6129342-6129468 Caenorhabditis elegans
Exon91274   139   III: 6129912-6130050 Caenorhabditis elegans
Exon91290   279   III: 6130212-6130490 Caenorhabditis elegans
Exon91315   305   III: 6130781-6131085 Caenorhabditis elegans
Exon91342   161   III: 6131587-6131747 Caenorhabditis elegans
Exon91371   164   III: 6136115-6136278 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y42G9A.4r.3 6124070 6136278 -1

1 Sequence

Length
2801

1 Sequence Ontology Term

Identifier Name Description
transcript